Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID42250_PtRNAdb
Plant SourceGossypioides kirkii     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-KI_09.trna38
tRNA locuschr-KI_09 : 31962972 - 31963045 (+)
IsoacceptorVal

[NOTE: User can view the results of the consensus based study of all the tRNAs of Val isoacceptor in Gossypioides_kirkii plant by clicking on the isoacceptor]

IsodecoderCAC

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAC isodecoder in Gossypioides_kirkii plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GTCTGGGTGGTGTAGTTGGTTATCACGCTATTCTCACACACTAGAGGCCCGTGGTTCGAACCCGGGCTCAGACA
tRNA secondary structure
>>>>>>>..>>>...........<<<.>>>.>.......<.<<<....>>.>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GACTAACATTTTAAACATAAGTGATTAAAATGTAATCTGAGGTAAACAAAAGTGACTTTTTTTGTAGTTTGACCTTATAATTAAACAACTAAAGTGTGAT
Downstream sequence (upto 100nt)
AATTTTTTTAATTTCATTCAAACCTCCGACTTATTAATTCTTTGATGCTGGACCTTTTTTCCCAGGTCTCTCCAAAACAAGCTTCAGCCAGCGGCCCTCC
Mature tRNA
GUCUGGGUGGUGUAGUUGGUUAUCACGCUAUUCUCACACACUAGAGGCCCGUGGUUCGAACCCGGGCUCAGACA
HMM Score49.20
Secondary structure Score13.80