Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID42131_PtRNAdb
Plant SourceGossypioides kirkii     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-KI_07.trna63
tRNA locuschr-KI_07 : 8084695 - 8084622 (-)
IsoacceptorIle

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ile isoacceptor in Gossypioides_kirkii plant by clicking on the isoacceptor]

IsodecoderAAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of AAT isodecoder in Gossypioides_kirkii plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGCCTATTAGCTCAGCTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCAGGTTCGAGACCTGCATTAGCTA
tRNA secondary structure
>>>..>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<..<<<.
Upstream sequence (upto 100nt)
TGTTCGGATATCTAAAACCTTATCGATTCACTCTGCAGTTTTGGATGTTCTTCCTTTTCTAAAGTGATATTAATATTTTTATTGAAAGCGTCTCATCGAA
Downstream sequence (upto 100nt)
AATTTTAGCTTTTTTTAATTTTTTGCTATTTTTCGCTTTTGGGCCAATAAGTTCTGAACTTTTGGTTTTAGATTTCTCGCCAAAAGCCCATCTAATTGTT
Mature tRNA
GGCCUAUUAGCUCAGCUGGUUAGAGCGUCGUGCUAAUAACGCGAAGGUCGCAGGUUCGAGACCUGCAUUAGCUA
HMM Score50.50
Secondary structure Score17.80