Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID41747_PtRNAdb
Plant SourceGossypioides kirkii     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-KI_01.trna37
tRNA locuschr-KI_01 : 36285617 - 36285689 (+)
IsoacceptorArg

[NOTE: User can view the results of the consensus based study of all the tRNAs of Arg isoacceptor in Gossypioides_kirkii plant by clicking on the isoacceptor]

IsodecoderTCT

[NOTE: User can view the results of the consensus based study of all the tRNAs of TCT isodecoder in Gossypioides_kirkii plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GCGCTTGTGGCCTAATGGATAAGGCGTCTGACTTCTAATCAGACGATTGTGGGTTCGAGTCCCACCAGGCGTG
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TGAATCAAGTGATGCGATAAAATTGGCAACATTTAAACCAGAAGTGTTATAATTAGTTCTGAAAGATGAAATTTTCTATTTAAAACAATCATTTTTAAAA
Downstream sequence (upto 100nt)
TTTATTCTTATTATTTTCTCATCAAAACTTTTTGGTCAAATATCAGGGGTAGTCCCTACAGTTTACCAAGGTTGTAGAATTTAAAACCTTAGAAACAGAA
Mature tRNA
GCGCUUGUGGCCUAAUGGAUAAGGCGUCUGACUUCUAAUCAGACGAUUGUGGGUUCGAGUCCCACCAGGCGUG
HMM Score49.40
Secondary structure Score17.40