Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID4154_PtRNAdb
Plant SourceAlloteropsis semialata     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-9.trna42
tRNA locuschr-9 : 87729798 - 87729883 (+)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Alloteropsis_semialata plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Alloteropsis_semialata plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGGGTGGTGGCGCAGTTGGCTAGCGCGTAGGTCTCATAGCTAAGTGAGTGATCCTGAGGTCGAGAGTTCGAGCCTCTCTCACCCCA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>.....................<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TTTTCAAAAAAATTTATTGTTCTTGTGTTTTTCCCGTAGAGTTAGCACGGGCATGCTACTAGTCTGATAAAAATGACCAGTTCAAATACAAATCACAGAT
Downstream sequence (upto 100nt)
TTTTTTTTTCTTTATCTCCCTCTCTGCCCTTTTTGCAACTCTTAAGCTGCAGCTTCTCCTTCTTTTGTAGTTTTTCTTTTTCTATTTTTATTTGCATTTC
Mature tRNA
GGGGUGGUGGCGCAGUUGGCUAGCGCGUAGGUCUCAUAAUCCUGAGGUCGAGAGUUCGAGCCUCUCUCACCCCA
Intron Sequence
GCTAAGTGAGTG
Intron Position39-50
Infernal Score64.2
HMM Score40.70
Secondary structure Score23.50