Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID40022_PtRNAdb
Plant SourceFagopyrum tataricum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-8.trna18
tRNA locuschr-8 : 23647107 - 23647185 (+)
IsoacceptorSup

[NOTE: User can view the results of the consensus based study of all the tRNAs of Sup isoacceptor in Fagopyrum_tataricum plant by clicking on the isoacceptor]

IsodecoderTTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of TTA isodecoder in Fagopyrum_tataricum plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GTCACGCTTAGAAGAAATGGTAGTTCGCTGGGATTTAAAAAATTTCCCAGAGGTGCTGGTTCGACTCCAGCTCGTGACA
tRNA secondary structure
>>>>>>....>>>..........<<<.>>>>>.............<<<<<....>>>>>.......<<<<<.<<<<<<.
Upstream sequence (upto 100nt)
AAGTTTTTTTAGTGGGGATTATAGTGTTTTAGCGGAAACACGACCGGATGTAGTCATGTTAGTTTTGCTTTTCTTGTGCATGACGAACCGGGTGAACAAA
Downstream sequence (upto 100nt)
AGGCCTCCATAGATGTGGCTGCAGCAGAAGACTTTTGGGTTATGTACGGTGATAATGGAATAACAACATAGAGTTTTTGTAGCAATAAAGGGTACAAACA
Mature tRNA
GUCACGCUUAGAAGAAAUGGUAGUUCGCUGGGAUUUAAUCCCAGAGGUGCUGGUUCGACUCCAGCUCGUGACA
Intron Sequence
AAAATT
Intron Position39-44
Infernal Score26.0
HMM Score10.90
Secondary structure Score15.10