Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID39763_PtRNAdb
Plant SourceFagopyrum tataricum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-6.trna51
tRNA locuschr-6 : 50107090 - 50107019 (-)
IsoacceptorCys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Cys isoacceptor in Fagopyrum_tataricum plant by clicking on the isoacceptor]

IsodecoderGCA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GCA isodecoder in Fagopyrum_tataricum plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGGTCCATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAATGGTCATTGGTTCGAATCCGGTTGGGCCCT
tRNA secondary structure
>>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ATTAAATTGTTTTTGGTTCTAAACAAAAAGCAATGCATCTTGCCTATGTTGGAGCTGAAATCAACGTCAAAAAAAATAATTACAACAAAGTAAAACAAAG
Downstream sequence (upto 100nt)
TTGATTTTTTTTCCTCATATTAAAATCACACGCTTACTTTACTCTCCTAATTTTGGTTGATTTTTTAATTCCAAAAAATAACAGTTTTAATATGCCGTAA
Mature tRNA
GGGUCCAUAGCUCAGUGGUAGAGCAUUUGACUGCAGAUCAAAUGGUCAUUGGUUCGAAUCCGGUUGGGCCCU
HMM Score59.80
Secondary structure Score20.40