Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID39539_PtRNAdb
Plant SourceFagopyrum tataricum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-3.trna85
tRNA locuschr-3 : 43351921 - 43351833 (-)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Fagopyrum_tataricum plant by clicking on the isoacceptor]

IsodecoderGGA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GGA isodecoder in Fagopyrum_tataricum plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GCGGAGGTGGCCGAGTGGTTCAAGGCGTAGCATTGGAAATGCTATGTAGACTTTTGTTTACCGAGGGTTCGAATCCCTCTCTTTCCGTA
tRNA secondary structure
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>.......<<....>>>>>.......<<<<..<<<<<<<<.
Upstream sequence (upto 100nt)
ATGTTATCTCATAAGGTAAATAATCATTTGTGGATAAAGTCTCTAGTGAAATCTCCAGCAAATCATGATAGTCCGATTACGGTGATAATACGCACGACAT
Downstream sequence (upto 100nt)
CCTTCGCCCAACTTACCAACATCGCTGACCATAACAAATCAAGCAAGAGGTAGATCCTTCTTTCTATCTTTATATATATATTCTTAATGTATATACTCTA
Mature tRNA
GCGGAGGUGGCCGAGUGGUUCAAGGCGUAGCAUUGGAAAUGCUAUGUAGACUUUUGUUUACCGAGGGUUCGAAUCCCUCUCUUUCCGUA
HMM Score38.30
Secondary structure Score19.00