Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID39527_PtRNAdb
Plant SourceFagopyrum tataricum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-3.trna74
tRNA locuschr-3 : 50508770 - 50508686 (-)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Fagopyrum_tataricum plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Fagopyrum_tataricum plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGGGGTGGCGCAGTTGGTTAGCGCGTAGGTCTCATAGCTTAGAGTGATCCTGAGGTCGAGAGTTCGAGCCTCTCTCACCCCAACG
tRNA secondary structure
>>>>>..>>>>.........<<<<.>>>>...................<<<<.....>>>>>.......<<<<<...<<<<..<.
Upstream sequence (upto 100nt)
TACTTATATAAGCACCCGTCAAAATGGAAGAAACGACACTAGCGGAACATCTAGTGTGTATACCTGTATATGATTAAAATATTCCCACAAAACATCAAAT
Downstream sequence (upto 100nt)
CTTTTTCGCCTTACCCATGTCCACTTGCTCTTCCTACAAATACTACGTAGATTCCATGCCCACTTAACTTGATATGACGATCTTCACGAAACGACGAAAC
Mature tRNA
GGGGGUGGCGCAGUUGGUUAGCGCGUAGGUCUCAUAAUCCUGAGGUCGAGAGUUCGAGCCUCUCUCACCCCAACG
Intron Sequence
GCTTAGAGTG
Intron Position37-46
Infernal Score52.7
HMM Score37.90
Secondary structure Score14.80