Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID39242_PtRNAdb
Plant SourceFagopyrum tataricum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-1.trna20
tRNA locuschr-1 : 771301 - 771374 (+)
IsoacceptorHis

[NOTE: User can view the results of the consensus based study of all the tRNAs of His isoacceptor in Fagopyrum_tataricum plant by clicking on the isoacceptor]

IsodecoderGTG

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTG isodecoder in Fagopyrum_tataricum plant by clicking on the isodecoder]

tRNA Sequence
GCGGATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATGCGCGGGTTCAATTCCCGTCGTTCGCC
tRNA secondary structure
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GACTTTATAGTCTAGGAAAAAGCTTCTCTTTGATAGCGGTCATAGGGGTTCAGAAAGGATCTGATCGTAGATAGAGACTTAAACCTGTGCGGGGGTAAGG
Downstream sequence (upto 100nt)
CATCAATAAATGGACCTTTTTTTACGAAGACACAAGACAAAGCTAGAAAGCATTTTTTCTGCAAGTCATCTCGAGGCTTTCAAACGTATCCAAGCAATTG
Mature tRNA
GCGGAUGUAGCCAAGUGGAUCAAGGCAGUGGAUUGUGAAUCCACCAUGCGCGGGUUCAAUUCCCGUCGUUCGCC
HMM Score33.60
Secondary structure Score16.90