Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID38945_PtRNAdb
Plant SourceEutrema salsugineum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-3.trna22
tRNA locuschr-3 : 23278056 - 23277981 (-)
IsoacceptorHis

[NOTE: User can view the results of the consensus based study of all the tRNAs of His isoacceptor in Eutrema_salsugineum plant by clicking on the isoacceptor]

IsodecoderGTG

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTG isodecoder in Eutrema_salsugineum plant by clicking on the isodecoder]

tRNA Sequence
GTCAAAAGCTGTAGTTTAGTGGTGAGAATTCCACGTTGTGGCCGTGGAGACCTGGGCTCGAATACCAGCAGCCACA
tRNA secondary structure
>>.....>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>.........<<<<<<<<.<<.
Upstream sequence (upto 100nt)
ACAAGCATTAAATGAATATTTTGTATTCTGAAATTGTCGAAAGCATAAATTTTTTTTTTTTTGTATATACTATTTAAAGTGCTATAAATTAAAATAATAT
Downstream sequence (upto 100nt)
CTAAATTTTTATTTTATTTTTGTTCTTTCTTTTTACCAAGCCTCCGACCAAAATAGAAGGTTCTACTTGTATTCAAAGAGTTGTTGTACTGGACGCACTT
Mature tRNA
GUCAAAAGCUGUAGUUUAGUGGUGAGAAUUCCACGUUGUGGCCGUGGAGACCUGGGCUCGAAUACCAGCAGCCACA
HMM Score20.70
Secondary structure Score15.40