Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID3890_PtRNAdb
Plant SourceAlloteropsis semialata     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-4.trna22
tRNA locuschr-4 : 55499831 - 55499745 (-)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Alloteropsis_semialata plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Alloteropsis_semialata plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGGGTGGTGGAGCAGTTGGCTAGCGCGTAGGTCTCATAGCTTGTTTGAGTTATCCCGAAGTCGAGAGTTCGAGCCTCTCTCACCCCA
tRNA secondary structure
>>>>>>>..>.>>.........<<.<.>.>>......................<<.<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TATCCTCTGAGGTGGTGGTGATGTATCCGCTGCTTTCGGTGGAAGTTGTGACTGGTCCCAGTCTCACTATATTGGAATGTTTCCTCTGCTTCACACCAAA
Downstream sequence (upto 100nt)
AATATGCCAAGCGATGAGGAGTTGCTCTCGTGACAACTTGGGTCGTCACGTTCATCATATCCCATAAGTGATGGTTGGAGCCCTAGCTGAGCTTGGTCTT
Mature tRNA
GGGGUGGUGGAGCAGUUGGCUAGCGCGUAGGUCUCAUAAUCCCGAAGUCGAGAGUUCGAGCCUCUCUCACCCCA
Intron Sequence
GCTTGTTTGAGTT
Intron Position39-51
Infernal Score42.3
HMM Score28.70
Secondary structure Score13.60