Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID38864_PtRNAdb
Plant SourceEutrema salsugineum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-2.trna17
tRNA locuschr-2 : 7092244 - 7092325 (+)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Eutrema_salsugineum plant by clicking on the isoacceptor]

IsodecoderAGA

[NOTE: User can view the results of the consensus based study of all the tRNAs of AGA isodecoder in Eutrema_salsugineum plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GTGGACGTGCCGGAGTGGTTAGCAGGCATGACTAGAAACCATGTAGGCTTTGCCCGCGTAGGTTCGAATCCTGCCGTTCATG
tRNA secondary structure
>>>>>>>..>.>..........<.<.>>>>.........<<<<..>>>...<<<...>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TATCCAAAACAGGTTCCAGGAAAGTAAAAGTGGTCGTGACGGAGTGGTTATCAGGCATGACTAGAAATCATTATCTAAATCAGGTTCCATTAAAGTAAAA
Downstream sequence (upto 100nt)
TTTTACTAAAATGTTTTGGGAAAGACCTTTTAAAGGAATACCTATTACAAATGGTTTTCATGGAAGTTGTAAAATGTAGTAATTTAAATCAAAAGCCATA
Mature tRNA
GUGGACGUGCCGGAGUGGUUAGCAGGCAUGACUAGAAACCAUGUAGGCUUUGCCCGCGUAGGUUCGAAUCCUGCCGUUCAUG
HMM Score35.70
Secondary structure Score5.60