Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID3870_PtRNAdb
Plant SourceAlloteropsis semialata     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-3.trna83
tRNA locuschr-3 : 19044089 - 19044002 (-)
IsoacceptorAla

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ala isoacceptor in Alloteropsis_semialata plant by clicking on the isoacceptor]

IsodecoderTGC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGC isodecoder in Alloteropsis_semialata plant by clicking on the isodecoder]

tRNA Sequence
GGAGAGATGGCTGAGTTGTTGATAGCCTCGGTCTTGCAAACCGGCATAGTTCTTGGAACTATCAAGGGTTCCAATCCCTCTCTCTGCT
tRNA secondary structure
>.>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.>>>>>>>...<<<<<<<..>>>>.......<<<<.<<<<<.<.
Upstream sequence (upto 100nt)
ATATCAAAGGTGGACTTACATCTAAGACGTTTATAGGAGTTAGTAGAGCATTTCATATAGCTATATTCTATTTGTAGGAATAAAATAGGGATTGGGCTGT
Downstream sequence (upto 100nt)
TTTGTTTATTGAATACATTTGATTTCTCATGGTATCCATAGAGGGACAAGGGGATATCTTAGCAAGTGTTTGAACCGAGAGCTAAGATGGTTGGGTTGGC
Mature tRNA
GGAGAGAUGGCUGAGUUGUUGAUAGCCUCGGUCUUGCAAACCGGCAUAGUUCUUGGAACUAUCAAGGGUUCCAAUCCCUCUCUCUGCU
HMM Score17.10
Secondary structure Score14.40