Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID37231_PtRNAdb
Plant SourceCynara cardunculus     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-2.trna29
tRNA locuschr-2 : 57345295 - 57345382 (+)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Cynara_cardunculus plant by clicking on the isoacceptor]

IsodecoderGCT

[NOTE: User can view the results of the consensus based study of all the tRNAs of GCT isodecoder in Cynara_cardunculus plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGAGAGATGGATTAGTGGACGAAAGTGGCGGATTGCTAATCCATTGTATGAGTTATTTGTAGCGAGAGTTCGAATCCCTCTCTTTCCG
tRNA secondary structure
>>>>>>>..>.>>.........<<.<.>>>>>.......................<<<<<...>>>.>.......<.<<<<<<<<<<.
Upstream sequence (upto 100nt)
TTGCTAATTATATAATAACGATAAAGAATGTCAAAAAAAAATACTTTCTTTAATCCTTACTTGATGTGTAATGTAAGATAGTAATTATCTTTTTCAATTG
Downstream sequence (upto 100nt)
TTTCCGTTGATGACTTTTCATTTTTTTCTTTCAAATTTCGCATCCCCCTTTTTATTTTTTTACTAGTTAAACGTGTGAAATAGATAAAATAAAATTTTAA
Mature tRNA
GGAGAGAUGGAUUAGUGGACGAAAGUGGCGGAUUGCUAAUUUGUAGCGAGAGUUCGAAUCCCUCUCUUUCCG
Intron Sequence
ATCCATTGTATGAGTT
Intron Position39-54
Infernal Score33.8
HMM Score25.20
Secondary structure Score8.60