Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID36929_PtRNAdb
Plant SourceCynara cardunculus     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-10.trna2
tRNA locuschr-10 : 1440427 - 1440506 (+)
IsoacceptorLeu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Leu isoacceptor in Cynara_cardunculus plant by clicking on the isoacceptor]

IsodecoderTAA

[NOTE: User can view the results of the consensus based study of all the tRNAs of TAA isodecoder in Cynara_cardunculus plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GCTTTTGGCGTAGTGGTAAGCGCTTGGATCCTAACATGTAGTATCAAACCAGGTCATGGGTTCGAATCCCATGAGATGCA
tRNA secondary structure
>>.....>>>>........<<<<.>>>.>.................<.<<<....>>>>>.......<<<<<.....<<.
Upstream sequence (upto 100nt)
TAACTATTATTGGGTCATTGACCAACATTTTTCTATATCGAAATGTGGCGTTGATTTCTATGCTATGATGAAATAAGTTGCACCTTCTCTATCAGCAAAT
Downstream sequence (upto 100nt)
TAATAATGCGAAAGGTATGATTGCTACATTATAATGAAATAAGTTGCTCCCTCTCCTTGAGCAATTGCTTTTGCAATTGCTTTTGGGGTAGTGTTCATCC
Mature tRNA
GCUUUUGGCGUAGUGGUAAGCGCUUGGAUCCUAACAAACCAGGUCAUGGGUUCGAAUCCCAUGAGAUGCA
Intron Sequence
ATGTAGTATC
Intron Position36-45
Infernal Score34.6
HMM Score25.80
Secondary structure Score8.80