Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID36910_PtRNAdb
Plant SourceCynara cardunculus     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-10.trna12
tRNA locuschr-10 : 15524274 - 15524362 (+)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Cynara_cardunculus plant by clicking on the isoacceptor]

IsodecoderACT

[NOTE: User can view the results of the consensus based study of all the tRNAs of ACT isodecoder in Cynara_cardunculus plant by clicking on the isodecoder]

tRNA Sequence
AGAGATATGGCTGAGTGGATGAAAGCGGCGGACTACTAATCCGTTGTACGAGTTATTCGTACCGAGGGTTCAAATCTCCTCTCTTTCCG
tRNA secondary structure
.>>>>.>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>>...<<<<<<<.>>>>>.......<.<<<<<.<<<<..
Upstream sequence (upto 100nt)
GATTGTCGTGTCTTTCAGTTATTCTTTTGTCCATTTCCTAGTATATTAATAACAAAACGAATGATGTGTAATGTAAGATAGTAATTATCTTTTTCAATTG
Downstream sequence (upto 100nt)
TTTTCGTTAATAACTTTCCATTTTTTTTCTTTCAAATTCCCAAAAAAATGGCAACAAATTTGCATCACCTTGAACTTCTAGCTCTCCCCTCTCGTTGACA
Mature tRNA
AGAGAUAUGGCUGAGUGGAUGAAAGCGGCGGACUACUAAUCCGUUGUACGAGUUAUUCGUACCGAGGGUUCAAAUCUCCUCUCUUUCCG
HMM Score25.90
Secondary structure Score19.00