Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID36602_PtRNAdb
Plant SourceCucurbita pepo     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG18.trna218
tRNA locuschr-LG18 : 1102400 - 1102095 (-)
IsoacceptorGly

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gly isoacceptor in Cucurbita_pepo plant by clicking on the isoacceptor]

IsodecoderCCC

[NOTE: User can view the results of the consensus based study of all the tRNAs of CCC isodecoder in Cucurbita_pepo plant by clicking on the isodecoder]

tRNA Sequence
GCGCATCTAGTGTAGTGGTATCATAGTACCCTCCCACGGTATTGACTGGGGTTTGATTCCCCGGATGTGCA
tRNA secondary structure
>>>>>>>..>>>.........<<<.>>>>>..................................................................................................................................................................................................................................................<<<<<....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TAAAAGATTCTTGTTAGCCTTTTCATTTGTAACTCGAAAAGACCTTAACCCCTCGGTTACAGAGGGCTTTCATTACATGGGCTAAGATACTTGCAAGGGA
Downstream sequence (upto 100nt)
TGTCCATTTTGTTTACTCGAAAATATTGTTCTTAACAGTGTTTAAGGTGAGCCTAGGATTCTAATTTTAAAAGATTCTTGGTAGGCTTTTCATTCGTATG
Mature tRNA
GCGCAUCUAGUGUAGUGGUAUCAUAGUACCCUCCCACGGUAUUGACUGGGGUUUGAUUCCCCGGAUGUGCA
Intron Sequence
CGGTACTGACCGGGGTTGATTCTCCGGAAGCGCAAGACCATATTTTGTTTACTAAAAAATATTGTTCTCGTGTTTGAGGTTAGCCTAGGACTCCCATTTTAAAAGATTCTTGGTAGCCTTTTCATTTGTAACTCGAAAAGACCTTAACCCCTCGGTTACATAGGGCTTTCATTACATGGGCTAAGATACTTGCAACGGAAAGCATCTAGTGTTGTGGTATCATAGTGCCCTCCCA
Intron Position37-271
Infernal Score39.7
HMM Score11.20
Secondary structure Score28.50