Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID36582_PtRNAdb
Plant SourceCucurbita pepo     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG18.trna19
tRNA locuschr-LG18 : 887136 - 887345 (+)
IsoacceptorTyr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Tyr isoacceptor in Cucurbita_pepo plant by clicking on the isoacceptor]

IsodecoderGTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTA isodecoder in Cucurbita_pepo plant by clicking on the isodecoder]

tRNA Sequence
CCGATCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGATCCTTACTTCACTAGTTCAAATTCGGTAGGTTCGA
tRNA secondary structure
>.>>>>>..>>>>........<<<<.>>>>>................................................................................................................................................<<<<<.....>>>.>.......<.<<<<<<<<.<.
Upstream sequence (upto 100nt)
GTTGGATTTTTGTTTTAATCTTTTTTATATTATCGATCATTTGAGTTATTACTTGCACATGAAATGAATAATTAAATGTATGAAGCAATTATGTCATTCA
Downstream sequence (upto 100nt)
TAATGGTAGTTATTAAAGAACTTCAAGGAAAGGTTGAAAATCTAATCTGAACCTACTCAAAAATTCGTTGAGCAAGGCCAATCTCATTTGATTTCTGCAC
Mature tRNA
CCGAUCUUAGCUCAGUUGGUAGAGCGGAGGACUGUAGAUCCUUACUUCACUAGUUCAAAUUCGGUAGGUUCGA
Intron Sequence
TGGGTTTTATATTATCGACCATCTTAGTTATTACTTGCACATGAAAAGAATAATTAAATGTATGAATCAATTATGCCATTCATTTACGCTAAGTTGGTAGAGCAGAGGACTTTAGTGGGTCGCTAGAATCTTAGTAA
Intron Position38-174
Infernal Score27.6
HMM Score12.20
Secondary structure Score15.40