Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID36257_PtRNAdb
Plant SourceCucurbita pepo     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG15.trna45
tRNA locuschr-LG15 : 3503731 - 3503810 (+)
IsoacceptorGln

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gln isoacceptor in Cucurbita_pepo plant by clicking on the isoacceptor]

IsodecoderTTG

[NOTE: User can view the results of the consensus based study of all the tRNAs of TTG isodecoder in Cucurbita_pepo plant by clicking on the isodecoder]

tRNA Sequence
GATAGTTTAGTCGAGTTGTCTAAGGTGCTAGACTTTGACTCTCGTTCAAAAAGGCATGGATTCAAATCCCACAGCTGTCA
tRNA secondary structure
>>>>>>>..>>>...........<<<.>.>>>.......<<<.<............>>>.........<<<.<<<<<<<.
Upstream sequence (upto 100nt)
TCATCATCTCGATTCCCAACAGCACAATCCATGGATCGTATTGTAATCTCATGTCTCGAGATAGCTCGACCATCTTGATTTGTCCAAACACATTTGTCAG
Downstream sequence (upto 100nt)
TTTATTTTCATTTTTTGTAAAGCCTCGTGCCCGCTGCTAACACATATTGTTTGTTTTGACTTTTTATTTATCGTTGTTAACATCGTGGTTTTAAAACGCG
Mature tRNA
GAUAGUUUAGUCGAGUUGUCUAAGGUGCUAGACUUUGACUCUCGUUCAAAAAGGCAUGGAUUCAAAUCCCACAGCUGUCA
HMM Score23.20
Secondary structure Score6.20