Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID36083_PtRNAdb
Plant SourceCucurbita pepo     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG14.trna57
tRNA locuschr-LG14 : 5011317 - 5011389 (+)
IsoacceptorAla

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ala isoacceptor in Cucurbita_pepo plant by clicking on the isoacceptor]

IsodecoderTGC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGC isodecoder in Cucurbita_pepo plant by clicking on the isodecoder]

tRNA Sequence
GGAGATGTAGCTTAGATGGTAGAGCGCTTGCTTTGCATGCAAGTTGTACGGGGATTGATAACCCGCATCTCCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>.........<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TTCAATATTTCTTTATTTATGACATAATGAGTAGCGATATTTTTTCATTTTCACTATTATTCATGATGAGACGTTTAGGGTTTTGTGACGTAAAAATTGT
Downstream sequence (upto 100nt)
AAAGAAAGTATTTAATTTGTTATTATATTTTTCATTTTAACAATTATCGATGCCCCGCATCACCAAACCAAACTATTTGTTGTTAATATTTTGATATTTT
Mature tRNA
GGAGAUGUAGCUUAGAUGGUAGAGCGCUUGCUUUGCAUGCAAGUUGUACGGGGAUUGAUAACCCGCAUCUCCA
HMM Score19.20
Secondary structure Score23.30