Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID35861_PtRNAdb
Plant SourceCucurbita pepo     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG13.trna231
tRNA locuschr-LG13 : 463537 - 463462 (-)
IsoacceptorThr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Thr isoacceptor in Cucurbita_pepo plant by clicking on the isoacceptor]

IsodecoderCGT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CGT isodecoder in Cucurbita_pepo plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGGGTGGTGGTGCACTTGGCTAGCGCGTAGGTCTCGTAGCTGCGACTTATCGAGAGTTCGAGCCTCTCTCACCCCA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>>............<<<<<..>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ATAATTTTTTTTATTCTAACAATATAAAAAGTGTCGTATAAAACCTAGCAAAAGATCTGTTTGTGTCGGTTTTGACTTTGAATTTAAATCATCTTATCGA
Downstream sequence (upto 100nt)
CAATATATTTTTTTATTCTAACAATATGAAAAGTGTCATAAAACCTAGCAAAAGATCTGTTTGTGTCGGTTTGGGCTCGGAATTTAAAACTTTTTATCGA
Mature tRNA
GGGGUGGUGGUGCACUUGGCUAGCGCGUAGGUCUCGUAGACUUAUCGAGAGUUCGAGCCUCUCUCACCCCA
Intron Sequence
GCTGC
Intron Position39-43
Infernal Score29.7
HMM Score17.90
Secondary structure Score11.80