Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID35859_PtRNAdb
Plant SourceCucurbita pepo     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG13.trna229
tRNA locuschr-LG13 : 471421 - 471267 (-)
IsoacceptorIle

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ile isoacceptor in Cucurbita_pepo plant by clicking on the isoacceptor]

IsodecoderTAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of TAT isodecoder in Cucurbita_pepo plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
TGAATGGTGGTGTAGTTGGCTAGTGCGTAGGTCTTATAGCTTTGAGTTATCCTCTAGTGCCTAGGTCTTATAGCTTTGAGTTATCCTCTAGTGCGTAGGTCTTATAGCTTTGAGTTATCCTGAGGTCAAGAGTTCGAGCCTCTCTCACCCCTCAA
tRNA secondary structure
>>>.>>>..>>>>.........<<<<.>>>>.......................................................................................<<<<......>>>>.......<<<<.<<<....<<<.
Upstream sequence (upto 100nt)
TAACTTCGTGTTATCCTAAGGTCGAGAGTTTAAGCCTCTCTCACCCCACAATATGCCCTATAAAACATAGCAAAAGATCTATTTGTGTCGATTTGGACTA
Downstream sequence (upto 100nt)
TTTTGTTTTTTATTCTAACGATATAAAAAGTGTCATATAAAAACTAACAAAAGATCTGTTTGTGTCGGTTTGGACTATGAATTTAAATCTTCTTATCGAG
Mature tRNA
UGAAUGGUGGUGUAGUUGGCUAGUGCGUAGGUCUUAUAAUCCUGAGGUCAAGAGUUCGAGCCUCUCUCACCCCUCAA
Intron Sequence
GCTTTGAGTTATCCTCTAGTGCCTAGGTCTTATAGCTTTGAGTTATCCTCTAGTGCGTAGGTCTTATAGCTTTGAGTT
Intron Position39-116
Infernal Score29.4
HMM Score23.50
Secondary structure Score5.90