Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID35858_PtRNAdb
Plant SourceCucurbita pepo     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG13.trna228
tRNA locuschr-LG13 : 471908 - 471827 (-)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Cucurbita_pepo plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Cucurbita_pepo plant by clicking on the isodecoder]

tRNA Sequence
GGGGTGGTGGCGCAGTTCGCTAGCGCGTAGGTCTCATAATCCTGAGGTCGAGAGTAAGCCTCACTCACCCCA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>...................<<<<.....>.>>>.....<<<.<<<<<<<<.
Upstream sequence (upto 100nt)
CGAGAGTTTAAGCCTCTCTCACCCCACAATATGCCCTATAAAACATAGCAAAAGATCTGTTTGTGTCAGTTTGGACTCTGAATTTTAATCTTGTTATCGA
Downstream sequence (upto 100nt)
CAATATGCCCTATAAAACATAGCAAAAGATCTGTTTGTTTCAGTTTGGACTCTAAATTTTAATCTTGTTATCGAGAGGTGGTGGTGCAGTTCGCTAGCAC
Mature tRNA
GGGGUGGUGGCGCAGUUCGCUAGCGCGUAGGUCUCAUAAUCCUGAGGUCGAGAGUAAGCCUCACUCACCCCA
Intron Sequence
GCTTCAAGTT
Intron Position39-48
Infernal Score31.6
HMM Score17.70
Secondary structure Score13.90