Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID35842_PtRNAdb
Plant SourceCucurbita pepo     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG13.trna209
tRNA locuschr-LG13 : 3373839 - 3373674 (-)
IsoacceptorAsn

[NOTE: User can view the results of the consensus based study of all the tRNAs of Asn isoacceptor in Cucurbita_pepo plant by clicking on the isoacceptor]

IsodecoderGTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTT isodecoder in Cucurbita_pepo plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GCTTTGGTTGAGTGGTTAAGGCGTGTGCCTGTTCGAATCTCTTAGGCGACGTGAAAGAAAATTTTAATTCCGAGTTAATTAGATATTTGTTTTTTTTTTTTTTTTTTTTTTGTGCCTGCTAAGTACAAGGGGTTTCCCCGCGATAGTTCGATTCTCTTAGGCACCG
tRNA secondary structure
>..>..>>>..........<<<.>>>>>..............................................................................................<<<<<.>>>>...<<<<..>>.>>.......<<.<<<.....<.
Upstream sequence (upto 100nt)
ATTTGTATTTTTTTCTTTTATTTTTTTAAAAATCTATTAGAAAAAGTTTAACTTTCAAATTTTTGTATAGCTTAGACCTCTACTACAGTGGATGTGTGTC
Downstream sequence (upto 100nt)
TGAAATAAAATTTTAATGGCGAGTTAATTAGATATTTGTTTTTTTATTTTTTTTTATTTTTTTTATTTTTTAAAATCTATTAGAAAAAGTTTAACTTTCA
Mature tRNA
GCUUUGGUUGAGUGGUUAAGGCGUGUGCCUGUUCAGUACAAGGGGUUUCCCCGCGAUAGUUCGAUUCUCUUAGGCACCG
Intron Sequence
GAATCTCTTAGGCGACGTGAAAGAAAATTTTAATTCCGAGTTAATTAGATATTTGTTTTTTTTTTTTTTTTTTTTTTGTGCCTGCTA
Intron Position35-121
Infernal Score28.5
HMM Score15.20
Secondary structure Score13.30