Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID35407_PtRNAdb
Plant SourceCucurbita pepo     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG10.trna19
tRNA locuschr-LG10 : 5368128 - 5368373 (+)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Cucurbita_pepo plant by clicking on the isoacceptor]

IsodecoderCTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTT isodecoder in Cucurbita_pepo plant by clicking on the isodecoder]

tRNA Sequence
GTCTATCTAGCTTAATCGGTAGAGCGCAAGGCTCTTTACCTTGTGGTCATGGGTTTGAGCCCCATGGTGGGTG
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>....................................................................................................................................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TATCAAAAACTTCTCTTTGTTTGGTTTGTGGTTATAATCTTGTGGACGTTTTTTTATTTTATTATTTTTGTTATCGAACCCAATAGTAAGTATCATTTGA
Downstream sequence (upto 100nt)
TTTAACATTTAGAAAATGATGCAATGGACCTGAGATTGAACCTAATGGTTTGCACCATGTGAGCCGGTCTAGCTTCAAACTTTGTCTTATATGATTATTT
Mature tRNA
GUCUAUCUAGCUUAAUCGGUAGAGCGCAAGGCUCUUUACCUUGUGGUCAUGGGUUUGAGCCCCAUGGUGGGUG
Intron Sequence
ACCTTGTGGTCGTGGATTTCTACAATTTTAAAATTGTTGTTAGGCTCAATTATTTTTCAAATTTTGTCCTATATTATTATTTACTTTTAAAATTTAGAAAATGATGGAGTAGACCTGAGATCCAACCCAATAGTTTGCACCACTTGGGGCTTAATTGGTAGGCAAGGCTCTTA
Intron Position38-210
Infernal Score42.3
HMM Score25.70
Secondary structure Score16.60