Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID35318_PtRNAdb
Plant SourceCucurbita pepo     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG10.trna101
tRNA locuschr-LG10 : 9584010 - 9583922 (-)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Cucurbita_pepo plant by clicking on the isoacceptor]

IsodecoderCGA

[NOTE: User can view the results of the consensus based study of all the tRNAs of CGA isodecoder in Cucurbita_pepo plant by clicking on the isodecoder]

tRNA Sequence
GTCAATATGTCCGAGTGGTTAAGGAGACAGACTCGAAATCTGTTGGGCTATGCCTACGTAGGTTTGAATAATTCTATTGGAATCTCACA
tRNA secondary structure
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<..>>>...<<<...>.>...........<.<<<<<<.......<<.
Upstream sequence (upto 100nt)
ATCACACATCGGTTGAACAACAAGGAACAAATAATTCTTTATATAAGTGTCAATATGTCCTAATGGTTAAGGGGAAGGAATCATTCCTTATGTAAGGGGT
Downstream sequence (upto 100nt)
TCGGTTGAACAAGGAACAAATCATTCTTCATACAAGAGTGTTAATATGTTCGAGTGGTTAAGGAGATAGACTTGAAATCTATTGGGCTATGCCTGCGTAG
Mature tRNA
GUCAAUAUGUCCGAGUGGUUAAGGAGACAGACUCGAAAUCUGUUGGGCUAUGCCUACGUAGGUUUGAAUAAUUCUAUUGGAAUCUCACA
HMM Score16.90
Secondary structure Score16.60