Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID35229_PtRNAdb
Plant SourceCucurbita pepo     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG09.trna429
tRNA locuschr-LG09 : 3837996 - 3837926 (-)
IsoacceptorThr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Thr isoacceptor in Cucurbita_pepo plant by clicking on the isoacceptor]

IsodecoderTGT

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGT isodecoder in Cucurbita_pepo plant by clicking on the isodecoder]

tRNA Sequence
GCCCCTATAGCTTAGTGGTAGAGCGTCAATCTTGTAAATGGAAGGTTTGTAGTTCAATCTTGCATGGGGCA
tRNA secondary structure
>>>>>.>..>>>>.......<<<<.>>.>>.......<<.<<.....>>>>>.......<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TATTTGGGTCAGTCACAATTTGATTGGTGCTCGGGTTGGCGTTGAAGCAAACCATCATCCATCCAATGCTTGCAAAGGAGTTTTGGATCTAGAATGAATA
Downstream sequence (upto 100nt)
CTTTTTTGTCTCCCTTTTTTTATTTTTTCCCCTTTATTTTTTCCCCCTAAAATATTAAGCAAATCCATGTTTTTATTTTTTCCCCTATGCACTTCAAATA
Mature tRNA
GCCCCUAUAGCUUAGUGGUAGAGCGUCAAUCUUGUAAAUGGAAGGUUUGUAGUUCAAUCUUGCAUGGGGCA
HMM Score28.60
Secondary structure Score8.00