Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID35133_PtRNAdb
Plant SourceCucurbita pepo     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG09.trna292
tRNA locuschr-LG09 : 5407662 - 5407454 (-)
IsoacceptorIle

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ile isoacceptor in Cucurbita_pepo plant by clicking on the isoacceptor]

IsodecoderAAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of AAT isodecoder in Cucurbita_pepo plant by clicking on the isodecoder]

tRNA Sequence
GGCTTATTAGCTCAGTTGGTTAGAACATTGTGCTAATAACACAAATGTTTCAGGTTTGATACTTGCATGAGTCA
tRNA secondary structure
>>>>>>>..>.>>.........<<.<.>>>>>..............................................................................................................................................<<<<<......>>>>.......<<<<.<<<<<<<.
Upstream sequence (upto 100nt)
AAATTTGAACGTTTTAAGTTCTATTGTGCATAAAATTATGTAAGCTAAACTCGATTGATTAGATTAGGAGTTTTCAATCTGCAATGTGCATAAAAACTTT
Downstream sequence (upto 100nt)
ATTTCATTAATTCTCAATGAAATCTTTAATGATACAGGGTTAAAGCACTACAAGCATTAAAAGATAATGACTTAAAGTTTTAAGTTTATTATGCATAAAA
Mature tRNA
GGCUUAUUAGCUCAGUUGGUUAGAACAUUGUGCUAAUAACACAAAUGUUUCAGGUUUGAUACUUGCAUGAGUCA
Intron Sequence
AGACAAAATTAAGTTCTATTATGCATAAAATTATGCAACCTAAGCTCGATTGATTAGATTAGGAGCTACCGATCTGCAATGTGCATAAAATCTTTGGCTTATTAGCTAAGTTGGTTAGAACATCGTGCTAACAAA
Intron Position39-173
Infernal Score24.2
HMM Score19.20
Secondary structure Score5.00