Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID35035_PtRNAdb
Plant SourceCucurbita pepo     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG09.trna192
tRNA locuschr-LG09 : 9657030 - 9656938 (-)
IsoacceptorTyr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Tyr isoacceptor in Cucurbita_pepo plant by clicking on the isoacceptor]

IsodecoderGTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTA isodecoder in Cucurbita_pepo plant by clicking on the isodecoder]

tRNA Sequence
B-Box
CCGACCTTAGCTCAGATGGTAGAGCGGAGGACTGTAGTTGGAAAAACCCAAATAGTCATCCTTAGGTCGCTGGTTCGAATCCGGCAGGTCGGA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>...........................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ACATGCTTTAATACATTTCAATATTTAAACTCATATATTAAAATTTACTAAAAAATTATGTCGATAAACTTTCCGCATTTTGATAATAATGGGTCAATGA
Downstream sequence (upto 100nt)
CATCCTTCGTTTACTTTATTGTAATTTACATGCTTTAATACATTTTAATATTTATACTCATATATTAAATTTTACTAAAAAATTATGTCGATAAACTTTT
Mature tRNA
CCGACCUUAGCUCAGAUGGUAGAGCGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGAAUCCGGCAGGUCGGA
Intron Sequence
TTGGAAAAACCCAAATAGTC
Intron Position38-57
Infernal Score68.9
HMM Score37.40
Secondary structure Score31.50