Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID33794_PtRNAdb
Plant SourceCucurbita pepo     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG03.trna208
tRNA locuschr-LG03 : 12212805 - 12213000 (+)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Cucurbita_pepo plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Cucurbita_pepo plant by clicking on the isodecoder]

tRNA Sequence
GGCGTGGTGACGTAGTTGGCTAGCGCATAGGTCTCATAATCCTGAGGTCGAGAATTCGAGCCTCTCTCACCCCA
tRNA secondary structure
>>.>>>>...>>>.........<<<..>>>>...................................................................................................................................<<<<.....>>>>.........<<<<<<<<.<<.
Upstream sequence (upto 100nt)
CTGAGGTCAAGAGTTCGAGCTTCTCAAACCAAAATTCTTTTTTCATTCGCTTCTTTGAAGTCCAAGTAGATCAGTGTGTACTTCAAGGTTTATACTAATA
Downstream sequence (upto 100nt)
ATGAATTTTTTCATCGGTTTCTTTGAGGTCCAAGTAGGTCAACGTGTACCTCAAAGCCCATATCAATAGGGGGTGGTGGCGCAGTTGGCTAGCGCGTAGG
Mature tRNA
GGCGUGGUGACGUAGUUGGCUAGCGCAUAGGUCUCAUAAUCCUGAGGUCGAGAAUUCGAGCCUCUCUCACCCCA
Intron Sequence
GCTTGGAGAGTGATCATGTGGTCAAGAATTTGAGCCTCTCTCACCCCAATTATTTTTTTCGTTGGTTTCTTTGAGGTCCAAGTAGGTCAGCGTGTACCTCAAGCCTGTACCAGCAGGGGGTG
Intron Position39-160
Infernal Score31.2
HMM Score22.50
Secondary structure Score8.70