Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID33176_PtRNAdb
Plant SourceCucurbita pepo     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG01.trna28
tRNA locuschr-LG01 : 4364772 - 4365053 (+)
IsoacceptorTyr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Tyr isoacceptor in Cucurbita_pepo plant by clicking on the isoacceptor]

IsodecoderATA

[NOTE: User can view the results of the consensus based study of all the tRNAs of ATA isodecoder in Cucurbita_pepo plant by clicking on the isodecoder]

tRNA Sequence
CCAACCTTAGCTCTGATGGTAGAGCGGAGGACTATAGATCCATAGGTCGTTGGTTCAAATCCAGCAGGTTGGA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>.>>>........................................................................................................................................................................................................................<<<.<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TTATTTTTAAGAGAGACATATATGCTTTATATATTTTAAAATTTGTACTAAAAAATTACTTAAATAAACTTTCCACATTTTGATAATAACAATTCAATAG
Downstream sequence (upto 100nt)
CTTGAATATATTAAAAATTATGTAGAATTCAATAGCCGACTTTGATGTACAATTCAATAGCTGACCTCAGTTCAGATGGTAGAGAGGTCAGTTGTTGAAA
Mature tRNA
CCAACCUUAGCUCUGAUGGUAGAGCGGAGGACUAUAGAUCCAUAGGUCGUUGGUUCAAAUCCAGCAGGUUGGA
Intron Sequence
TTGGAAGATTCCAAATTAGTCTTCCTTAAGTCGCTGGTTTAAATCCGACAGGTTAAACTTCATTATTTATGCATTTTTAAAGAGAGATATATATACTTTATATATTTTAAAATTTGTAATCATATATTAAAAATGATGTAAATAAACTTTCAACATTTTGATAGTAATAATTCAATAGCGGACCTTAGCTTAGATGGTGGTGTGGAGCC
Intron Position38-246
Infernal Score33.8
HMM Score17.20
Secondary structure Score16.60