Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID32162_PtRNAdb
Plant SourceCoffea eugenioides     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-5.trna17
tRNA locuschr-5 : 2661867 - 2661938 (+)
IsoacceptoriMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of iMet isoacceptor in Coffea_eugenioides plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Coffea_eugenioides plant by clicking on the isodecoder]

tRNA Sequence
ATTAGAGTGGCGCAGTGGAAGCATGGTGAGCCCATAACCCATAGGTCCTAGTATCGAAATCTGGCTTTGATA
tRNA secondary structure
>>>>>>>..>.>>.......<<.<.>>>.>.......<.<<<.....>>>>.........<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TCACAAACTCAATGAGAAAAGGCTGCTTGACATAGACATAAAATTGCATTGTAAATTTATGTTAAGTTACATTTATTAATAACTATAAGTTTAAATAACA
Downstream sequence (upto 100nt)
TATTGGTGTTGCTTCTAACCACTATTTTCTATTTTTTAAGAAAATCATAACTCTGATGTATTTGAGTTGCTTCTGCCTACTATTTTCTAATTTTTAAGAA
Mature tRNA
AUUAGAGUGGCGCAGUGGAAGCAUGGUGAGCCCAUAACCCAUAGGUCCUAGUAUCGAAAUCUGGCUUUGAUA
HMM Score10.00
Secondary structure Score18.40