Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID31435_PtRNAdb
Plant SourceCoffea arabica     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-9c.trna11
tRNA locuschr-9c : 5950079 - 5949926 (-)
IsoacceptorArg

[NOTE: User can view the results of the consensus based study of all the tRNAs of Arg isoacceptor in Coffea_arabica plant by clicking on the isoacceptor]

IsodecoderTCT

[NOTE: User can view the results of the consensus based study of all the tRNAs of TCT isodecoder in Coffea_arabica plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GATATGATGGTACAATGGTTACTACATTTGTCTTCTATCACAAAGGTCCTAAGTTCAAATTTTGGTGGGTTGCATTTTGCAAAACTTAAAAAAAAATATTGATGGAAAAATTGAAAAACCGAAAACCACTGGTTCGATCCCGGTTCACCAGTTT
tRNA secondary structure
>>>.>>>..>>>..........<<<.>>>>.........................................................................................<<<<....>>>>>.......<<<<<<<<...<<<.
Upstream sequence (upto 100nt)
AAAAGAAAGAATCATGAGAGAATGAGATTTTGTAGGAAAAATGAAAAAAATGAATGTGGATGTTTGTTTTATATAAATGAATTATCAAAATGGCTAATAG
Downstream sequence (upto 100nt)
TGACCAATTTTCTTACAAAGTCAACTTTGGTATAGAACCGAATCGGTATCATGGCCAGTTCGCGGTTCAACCGATCGAAGCGGCCATTTTGAAAATATTG
Mature tRNA
GAUAUGAUGGUACAAUGGUUACUACAUUUGUCUUCUAACCGAAAACCACUGGUUCGAUCCCGGUUCACCAGUUU
Intron Sequence
TCACAAAGGTCCTAAGTTCAAATTTTGGTGGGTTGCATTTTGCAAAACTTAAAAAAAAATATTGATGGAAAAATTGAAAA
Intron Position38-117
Infernal Score22.4
HMM Score12.80
Secondary structure Score9.60