Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID30901_PtRNAdb
Plant SourceCoffea arabica     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-2e.trna25
tRNA locuschr-2e : 16648543 - 16648614 (+)
IsoacceptorGly

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gly isoacceptor in Coffea_arabica plant by clicking on the isoacceptor]

IsodecoderTCC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TCC isodecoder in Coffea_arabica plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GCGTCAGTAGTCCAACGGTCAGGATAATTGCCTTCCAAGCAATAGATCCGGGTTCGACTCCCGGCTGACGCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AACGCGCTACGTCACGTTCATGCAAAAGAAAGTCGAGAAACAAGTGCCATCAGATTTCGGAAATACATTTGGTTCTTAAAACTATTTCAGTGTCCACGGC
Downstream sequence (upto 100nt)
GCTCATGTCACGATGTCTTGCTTCATGCACACGAAAGTGTTTTTTCGAAGACGAGCTAAGACTGCTCCATGCACTGGAAAATATTAGAAAATTTGTTTTT
Mature tRNA
GCGUCAGUAGUCCAACGGUCAGGAUAAUUGCCUUCCAAGCAAUAGAUCCGGGUUCGACUCCCGGCUGACGCA
HMM Score44.40
Secondary structure Score26.90