Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID30453_PtRNAdb
Plant SourceCitrus sinensis     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-6.trna31
tRNA locuschr-6 : 14815110 - 14815039 (-)
IsoacceptorCys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Cys isoacceptor in Citrus_sinensis plant by clicking on the isoacceptor]

IsodecoderGCA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GCA isodecoder in Citrus_sinensis plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGGTCTATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGTCACCGGTTCGAACCCGGTTGGGCCCT
tRNA secondary structure
>>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TATTAGTGTTAACATTTTTCATACATAGCGTTAGGTTAATGACATTTCGCAATTTATACATAGATTTACATAAATAAACATTGCACACTCGATCGTGCTT
Downstream sequence (upto 100nt)
TTTTGGCTTAAATTATTTAGAAAGCACGCTTCTTTTGAAATATTGTTGCTTCAAAATACGTTAGAGACGCTAATAAGTGAAATTTTCATGGCTGTTAAAT
Mature tRNA
GGGUCUAUAGCUCAGUGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCACCGGUUCGAACCCGGUUGGGCCCU
HMM Score59.80
Secondary structure Score20.10