Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID30364_PtRNAdb
Plant SourceCitrus sinensis     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-4.trna18
tRNA locuschr-4 : 14427843 - 14427774 (-)
IsoacceptorHis

[NOTE: User can view the results of the consensus based study of all the tRNAs of His isoacceptor in Citrus_sinensis plant by clicking on the isoacceptor]

IsodecoderATG

[NOTE: User can view the results of the consensus based study of all the tRNAs of ATG isodecoder in Citrus_sinensis plant by clicking on the isodecoder]

tRNA Sequence
GACTTGTAGTTCAATGGTAAGAGTGTTATTTGATGATTTTAAAGTTTTGGTTCAAATCCAAATAACAACA
tRNA secondary structure
>..>>>..>>>>........<<<<.>>>...........<<<...>>>>>.......<<<<<<<<...<.
Upstream sequence (upto 100nt)
TAGCCCCTTATGGGCTATTAATTTTTCTTTTAAATATACCCCAAGCCCATTTTGAAAGAGTTAAATAAACAAATTTAGACATAATTTTTTTTTAACAAAA
Downstream sequence (upto 100nt)
TTATTTAAAAAAAAATACTTTGTAAAAACTACTTAGAAAAATGATACTTTTACACATTTAAAATAAATAATTTATTACTATTATTATTTAGAATTTAAAA
Mature tRNA
GACUUGUAGUUCAAUGGUAAGAGUGUUAUUUGAUGAUUUUAAAGUUUUGGUUCAAAUCCAAAUAACAACA
HMM Score10.40
Secondary structure Score11.60