Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID30354_PtRNAdb
Plant SourceCitrus sinensis     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-3.trna8
tRNA locuschr-3 : 18894046 - 18894126 (+)
IsoacceptorThr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Thr isoacceptor in Citrus_sinensis plant by clicking on the isoacceptor]

IsodecoderTGT

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGT isodecoder in Citrus_sinensis plant by clicking on the isodecoder]

tRNA Sequence
GCCCCTATAGCTCAGTGGCAGAGTTTCAGTCTTGTAGGCTGAAGGTCGGTAGTTTGATCCTGCATGGGGGCA
tRNA secondary structure
>>>>>>>..>>>>.......<<<<.>>>>>................<<<<<......>>>>.......<<<<.<<<<<<<.
Upstream sequence (upto 100nt)
TTTCCTTAATTTGTCATCATCATGTTACTTTGTTTCCCCCTATATATAAATATTTCAGGCAAAATTTGTTAAATAAGTGATTTGCTTCTTATTTGTCAAT
Downstream sequence (upto 100nt)
TTTTGGTAAAATTTTCGAACACTTATAGCATGGTAAAATCCACCAAACATTACCTATAGTTACGAGGGTCAAGTTAGTTCATTAACAATTAATTTTTGAC
Mature tRNA
GCCCCUAUAGCUCAGUGGCAGAGUUUCAGUCUUGUAGGCUGAAGGUCGGUAGUUUGAUCCUGCAUGGGGGCA
Intron Sequence
AACTCTGAT
Intron Position37-45
Infernal Score45.0
HMM Score30.60
Secondary structure Score14.40