Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID30179_PtRNAdb
Plant SourceCitrus maxima     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-9.trna17
tRNA locuschr-9 : 13768926 - 13768999 (+)
IsoacceptorPhe

[NOTE: User can view the results of the consensus based study of all the tRNAs of Phe isoacceptor in Citrus_maxima plant by clicking on the isoacceptor]

IsodecoderGAA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GAA isodecoder in Citrus_maxima plant by clicking on the isodecoder]

tRNA Sequence
GTCGGGATAGCTCAGCTGGTAGAGCAGAGGACTGAAAATCCTCGTGTCACCAGTTCAAATCTGGTTTCCTGGCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<.<<<<<<<<.
Upstream sequence (upto 100nt)
AGAAATGAAATTCCCCTCCCAAGACTTTTAATCCCTGTTTATTTTTTAATTGACATAGACCCAAGTCATCTAGTAAGATGAGAACGGTGTGTCGGAAATG
Downstream sequence (upto 100nt)
TATGATTAATATCTATGAGTATCTATCACTACAAATTCAGTGATATGGCTCGCCATACATATTCATTTATAGATCATGATACATACATACTTATCCATCT
Mature tRNA
GUCGGGAUAGCUCAGCUGGUAGAGCAGAGGACUGAAAAUCCUCGUGUCACCAGUUCAAAUCUGGUUUCCUGGCA
HMM Score40.10
Secondary structure Score20.80