Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID29567_PtRNAdb
Plant SourceCitrullus lanatus     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-6.trna43
tRNA locuschr-6 : 10803822 - 10803736 (-)
IsoacceptorTyr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Tyr isoacceptor in Citrullus_lanatus plant by clicking on the isoacceptor]

IsodecoderGTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTA isodecoder in Citrullus_lanatus plant by clicking on the isodecoder]

tRNA Sequence
B-Box
CCGACCTTAACTCAGTTGGTAGAGCGGAGGACTGTAGTAATGAACAGCTTAATCCTTAGGTCGCTGGTTCGAACCCGGCACGTCGGA
tRNA secondary structure
>>>>>.>...>>>........<<<..>>>>>.....................<<<<<.....>>>>>.......<<<<<<.<<<<<.
Upstream sequence (upto 100nt)
CTAAAGTGGTTTTGAGTGAAATAAAAACATGTTTCAAAAAAATCACTTCATGCATTAGAACTTAATTTTAATAATGATAATGCTGCAATTTCTCAACAAT
Downstream sequence (upto 100nt)
ATTTTTAAAAATTTTTCTTTTTCTTTTTTCCTCCTCCTTCGTCGGTCCCTTTTCATCCGTTCTTCTTATAAGTTAATCCTATAATTAATTACGACTTCTG
Mature tRNA
CCGACCUUAACUCAGUUGGUAGAGCGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGAACCCGGCACGUCGGA
Intron Sequence
TAATGAACAGCTTA
Intron Position38-51
Infernal Score55.0
HMM Score37.40
Secondary structure Score17.60