Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID29512_PtRNAdb
Plant SourceCitrullus lanatus     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-5.trna71
tRNA locuschr-5 : 26522390 - 26522319 (-)
IsoacceptorAsp

[NOTE: User can view the results of the consensus based study of all the tRNAs of Asp isoacceptor in Citrullus_lanatus plant by clicking on the isoacceptor]

IsodecoderGTC

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTC isodecoder in Citrullus_lanatus plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GTCATGGTAGTATAGTGGTGAGTATTCTCGCTTGTCACGCGGGTGACCCGGGTTCGATCCTCGGCAACGACA
tRNA secondary structure
>>>.>.>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<.<.<<<.
Upstream sequence (upto 100nt)
CCTTAAGCCTATGAGTTCAATTTTTAACTTTACCTCATAATTTCAACCTTTAAAGCATAGTCCAACGCTATAAAATTCTCATAGCATCGTTTTCTCCCAA
Downstream sequence (upto 100nt)
CCAAAAACTTGTTGCGTACAAAGTGAGTGTTATAATTTTAGTACAAAGTATGCGTCGAGAATTACTCAAGTATGTTCATTAATCAGCAAGGCTTTTATAG
Mature tRNA
GUCAUGGUAGUAUAGUGGUGAGUAUUCUCGCUUGUCACGCGGGUGACCCGGGUUCGAUCCUCGGCAACGACA
HMM Score41.40
Secondary structure Score8.00