Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID29051_PtRNAdb
Plant SourceCitrullus lanatus     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-10.trna71
tRNA locuschr-10 : 31403926 - 31403853 (-)
IsoacceptorHis

[NOTE: User can view the results of the consensus based study of all the tRNAs of His isoacceptor in Citrullus_lanatus plant by clicking on the isoacceptor]

IsodecoderGTG

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTG isodecoder in Citrullus_lanatus plant by clicking on the isodecoder]

tRNA Sequence
GCGGATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATGCATGGGTTCAATTCCCGTCGTTCGCC
tRNA secondary structure
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TGAGGCATTAGCATACTGACTCACCTTCTTCCTTCCCTTTCTAAGTCCAATCTCGAATGGAACATTTTTTTAGGATTTCTACTTATGTATAGGGTAGGGG
Downstream sequence (upto 100nt)
CATAATATATAGTTATAGAATATATAATTGATAAGATAAATACAGTAAATTTACCTCATATTTTTTTTGTTTGTAAAGATGAAGAAACAAATTCGATATT
Mature tRNA
GCGGAUGUAGCCAAGUGGAUCAAGGCAGUGGAUUGUGAAUCCACCAUGCAUGGGUUCAAUUCCCGUCGUUCGCC
HMM Score31.00
Secondary structure Score17.40