Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID28757_PtRNAdb
Plant SourceCicer arietinum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-Ca4.trna33
tRNA locuschr-Ca4 : 47762821 - 47762897 (+)
IsoacceptorAsn

[NOTE: User can view the results of the consensus based study of all the tRNAs of Asn isoacceptor in Cicer_arietinum plant by clicking on the isoacceptor]

IsodecoderATT

[NOTE: User can view the results of the consensus based study of all the tRNAs of ATT isodecoder in Cicer_arietinum plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGATCCATATGCTCATATTGGAATGAGCCCTCTCCTATTCGTATGGGAGGTTGGTGGTTCGAATCCACCTGGATCCG
tRNA secondary structure
>>>>>>>...>>>>..........<<<<.>>>>>..........<<<<<...>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AGAGTGCTGATATGATCCTAAAAAGTGAACCTGCTACGACGTGCCTTTGATCTCATGTTAAGTTCAATGTTTAAAATAAGAAATTATTTCAGTCTCTAAT
Downstream sequence (upto 100nt)
CCTTGTGTCATGTTTAAGTTTAGCAGTTAGCACTCATATTTATCTTCTTTGTGTGGAAATTGACGTTTTGGTCACCATGTAGTTCAGTGGAAAGGTAAAA
Mature tRNA
GGAUCCAUAUGCUCAUAUUGGAAUGAGCCCUCUCCUAUUCUGGGAGGUUGGUGGUUCGAAUCCACCUGGAUCCG
Intron Sequence
GTA
Intron Position41-43
Infernal Score25.6
HMM Score12.90
Secondary structure Score12.70