Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID28071_PtRNAdb
Plant SourceCenchrus americanus     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-2.trna135
tRNA locuschr-2 : 228247287 - 228247214 (-)
IsoacceptorPhe

[NOTE: User can view the results of the consensus based study of all the tRNAs of Phe isoacceptor in Cenchrus_americanus plant by clicking on the isoacceptor]

IsodecoderAAA

[NOTE: User can view the results of the consensus based study of all the tRNAs of AAA isodecoder in Cenchrus_americanus plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGGGATGTAGCTCAATTGGTAGAGCGATGATTAAAGCTTAACATAGGTTCGGGGTTCGATTCCTCGCATCTCCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>.......<<.<..<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CGGGGTTTGATTCCTTGCATCTCCAATAGTTATCTTTTTATTTCTATTTTCACATTACATGATTATAAATTATTAAACACTAGTAACAATAACAAAATTT
Downstream sequence (upto 100nt)
ATAAATTTTCTTTTTATTTCTATTTTCACATTACATGATTATAAATTATTAAAGACCGGAAACAATAACAAAAATTGGGGATGTAGCTCAATTGGTAGAG
Mature tRNA
GGGGAUGUAGCUCAAUUGGUAGAGCGAUGAUUAAAGCUUAACAUAGGUUCGGGGUUCGAUUCCUCGCAUCUCCA
HMM Score28.80
Secondary structure Score19.00