Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID27922_PtRNAdb
Plant SourceCapsicum chinense     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-9.trna85
tRNA locuschr-9 : 116807296 - 116807219 (-)
IsoacceptorGly

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gly isoacceptor in Capsicum_chinense plant by clicking on the isoacceptor]

IsodecoderCCC

[NOTE: User can view the results of the consensus based study of all the tRNAs of CCC isodecoder in Capsicum_chinense plant by clicking on the isodecoder]

tRNA Sequence
AGCATTCTTAGTTCAGTTCGTTAGAACGTGGGTCTCCCAAACCCGATGTCGTAGGTTCAAATCCTACGAAGCATGATT
tRNA secondary structure
>.>.>>>...>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<....<.<.
Upstream sequence (upto 100nt)
ACATACAAATTTTCTTTTTATGGGACTATATTCATGCAAGATATATTAGAGGCACAAAAATAATCTATTTTCTTTACAGTCGTATCTACTGTGATAAGAA
Downstream sequence (upto 100nt)
TTGTTCTTCTTAGATCAAGTTAGAATGAAATAGATTCATTCAGTAACTTTCACAACAATTGGAGCGAGTAGGATTTGATCCGATAATCAGGTAAAAAGTT
Mature tRNA
AGCAUUCUUAGUUCAGUUCGUUAGAACGUGGGUCUCCCAAACCCGAUGUCGUAGGUUCAAAUCCUACGAAGCAUGAUU
HMM Score34.00
Secondary structure Score8.50