Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID27777_PtRNAdb
Plant SourceCapsicum chinense     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-7.trna73
tRNA locuschr-7 : 210582791 - 210582862 (+)
IsoacceptorCys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Cys isoacceptor in Capsicum_chinense plant by clicking on the isoacceptor]

IsodecoderACA

[NOTE: User can view the results of the consensus based study of all the tRNAs of ACA isodecoder in Capsicum_chinense plant by clicking on the isodecoder]

tRNA Sequence
AGGTTCTTAGCTCAGTGGTAGATTATTTGACTACAAGTCAAGAGGTCACCAGTTTGAACCTGATAGGACCCT
tRNA secondary structure
.>>>>>>..>.>>.......<<.<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<..
Upstream sequence (upto 100nt)
AGATTTTACGTAAATATGAAAATAGTTAAGATTTTATGTAATTACATACTAAACTATTGGGATTTATGAAAATTGTTCTAATATTTAATACATATAATAA
Downstream sequence (upto 100nt)
TTCTTTTTTTATTTTCTAAATTAAGCACCCAAAAATGTGAGAAAATTAATGGGATTCTTTCATAAATTTGAAAGAAAATTAACATTTAATACATATCACA
Mature tRNA
AGGUUCUUAGCUCAGUGGUAGAUUAUUUGACUACAAGUCAAGAGGUCACCAGUUUGAACCUGAUAGGACCCU
HMM Score23.10
Secondary structure Score13.80