Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID27765_PtRNAdb
Plant SourceCapsicum chinense     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-7.trna60
tRNA locuschr-7 : 210568380 - 210568587 (+)
IsoacceptorPro

[NOTE: User can view the results of the consensus based study of all the tRNAs of Pro isoacceptor in Capsicum_chinense plant by clicking on the isoacceptor]

IsodecoderTGG

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGG isodecoder in Capsicum_chinense plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGGTCCTTAGTTCAGTGGTAAAGCATTTGACTTGGAGATCAAGAGGTTGCTAGTTCAAATTTCCCTGTTCATTTTATTTCTAAACTAAGGATCAAGAATTATGAAAAAGTGATATGAGATTCTATCATAGATGTTGAAGAAATTAATATTTGATAAATACATTTGACTGCAGATCATGAGGTCACCAGTTCGAACCTGGTAGGGCCCT
tRNA secondary structure
>>>>>>>..>>>.........<<<.>.>>>...............................................................................................................................................<<<.<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CTTTTATTTTATTTCTTAATCAAGCACAGAGAAATGTAGAAAAAGAAATGAGATTATTTCATAAATATGGAAATAAATTAATATTAGATACATATAACAA
Downstream sequence (upto 100nt)
TTTTATTTTATTTCTAAACTAAATGAGGTCATTTTATAAATGTAGGAAGAAATTAATATTTAGGAAAAAATACTTAAAACTATACCTTAAATTACTAATA
Mature tRNA
GGGUCCUUAGUUCAGUGGUAAAGCAUUUGACUUGGAAUCAUGAGGUCACCAGUUCGAACCUGGUAGGGCCCU
Intron Sequence
GATCAAGAGGTTGCTAGTTCAAATTTCCCTGTTCATTTTATTTCTAAACTAAGGATCAAGAATTATGAAAAAGTGATATGAGATTCTATCATAGATGTTGAAGAAATTAATATTTGATAAATACATTTGACTGCAG
Intron Position37-172
Infernal Score49.1
HMM Score34.90
Secondary structure Score14.20