Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID27638_PtRNAdb
Plant SourceCapsicum chinense     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-6.trna133
tRNA locuschr-6 : 107502880 - 107502668 (-)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Capsicum_chinense plant by clicking on the isoacceptor]

IsodecoderTGA

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGA isodecoder in Capsicum_chinense plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGGTTGTGTAGCTGAGTCGTAAAAGTGGAGGTCCTGAGGGACCAACACTGGAAATCGCATTGCCAATCCGAGGGTTTATATGATTGAGAGGTTCGAGTCCCCTTTGTTATTATTACCATATTATTGGGAGGTTCGAGTCCCCCACATCTTATTAAATAATTTGGTGCTCGTGTCACCTTAATATGGCGGGAGGTTCGAGTCCCCCATAATGCA
tRNA secondary structure
>.>>>>>...>>>..........<<<.>>>>>..............................................................................................................................................<<<<<........>>>.>>.......<<<<<<<<<<.<.
Upstream sequence (upto 100nt)
AGTATAGTTGGTATGATGATACCAACAACGTATGCCTTAATGTGTAATGTGGTTCAATGAATGAGAACATGTGATAGTTATTTTAAATGGGATTTAATAT
Downstream sequence (upto 100nt)
TATTATACCCTCTGGTTCGTACAACTATTTGCACTGGGGCCCTATCAACTGGGGGAGAGCTGATGCCATATAGCCCATGGGTGCCTTTGTACGTTATGAT
Mature tRNA
GGGUUGUGUAGCUGAGUCGUAAAAGUGGAGGUCCUGAGCACCUUAAUAUGGCGGGAGGUUCGAGUCCCCCAUAAUGCA
Intron Sequence
GGACCAACACTGGAAATCGCATTGCCAATCCGAGGGTTTATATGATTGAGAGGTTCGAGTCCCCTTTGTTATTATTACCATATTATTGGGAGGTTCGAGTCCCCCACATCTTATTAAATAATTTGGTGCTCGTGT
Intron Position39-173
Infernal Score20.3
HMM Score15.20
Secondary structure Score5.10