Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID27499_PtRNAdb
Plant SourceCapsicum chinense     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-4.trna48
tRNA locuschr-4 : 183947403 - 183947313 (-)
IsoacceptorTyr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Tyr isoacceptor in Capsicum_chinense plant by clicking on the isoacceptor]

IsodecoderGTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTA isodecoder in Capsicum_chinense plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
CCGACCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGTGGGAAATCCCTCAGATAATCCTTAGGTCACTGGTTCGAATCCGGTAGGTCGGA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.........................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ATTTGCATTGGAACTTGTTTTGACATTATTAGTGGAGGAACCACACTCACATGCATAATAATGTGTTATATAATTTTTGATGGGATTAACATAAAATTAT
Downstream sequence (upto 100nt)
GTATTTTTTTCTTTTTGTTTTTCTGCCTCTTTTGTAAGTTCTTTTTTCGGGCTTCGTGGATTAGAATTTGGCTTGAAATCATAACAAATCATCAAAGTTT
Mature tRNA
CCGACCUUAGCUCAGUUGGUAGAGCGGAGGACUGUAGAUCCUUAGGUCACUGGUUCGAAUCCGGUAGGUCGGA
Intron Sequence
TGGGAAATCCCTCAGATA
Intron Position38-55
Infernal Score72.0
HMM Score38.70
Secondary structure Score33.30