Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID26573_PtRNAdb
Plant SourceCapsicum baccatum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-5.trna86
tRNA locuschr-5 : 47165394 - 47165191 (-)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Capsicum_baccatum plant by clicking on the isoacceptor]

IsodecoderTGA

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGA isodecoder in Capsicum_baccatum plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GAGCTATGTAGCTGAGTGATAAAAGTGAAGGTCCTGAGGACTAATACTGGAAATTGCGGTTGCTAACATAGGGGTCTAAATGACTGGGTGGTTCAAGTCCTTCTTATTATATGATTGTAAGGTTTGATTCCCCCATTTTATATCACATTATTGGGTGCTTAAGTCACCTTAGTATGCCGGGAGGTTCGAGTCCCCCATGGTGCA
tRNA secondary structure
>.>>>>>...>>>..........<<<.>>>>>.....................................................................................................................................<<<<<........>>>.>>.......<<<<<<<<<<.<.
Upstream sequence (upto 100nt)
TGTAGTTGGTATGACGATATCAATAATGTATGGCTTAATGTGTAATATGGTCAAATGAATAGGAATGTATGAAAATAATATTTTAATAGGGCTTTAAAGA
Downstream sequence (upto 100nt)
TATGTATATCCTCTAGTTCATGCGGCTACATGCACTAGGGCCCTTCCAACTAGGGAATAGTTAGCTCATACAGCCCATGGGTGCCTTCTTATGCTATGAA
Mature tRNA
GAGCUAUGUAGCUGAGUGAUAAAAGUGAAGGUCCUGAGCACCUUAGUAUGCCGGGAGGUUCGAGUCCCCCAUGGUGCA
Intron Sequence
GACTAATACTGGAAATTGCGGTTGCTAACATAGGGGTCTAAATGACTGGGTGGTTCAAGTCCTTCTTATTATATGATTGTAAGGTTTGATTCCCCCATTTTATATCACATTATTGGGTGCTTAAGT
Intron Position39-164
Infernal Score20.8
HMM Score14.30
Secondary structure Score6.50