Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID26230_PtRNAdb
Plant SourceCapsicum baccatum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-1.trna87
tRNA locuschr-1 : 193992707 - 193992917 (+)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Capsicum_baccatum plant by clicking on the isoacceptor]

IsodecoderCGA

[NOTE: User can view the results of the consensus based study of all the tRNAs of CGA isodecoder in Capsicum_baccatum plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGGTTATGTAGCTGAGTCGTAAAAGTGGAGGTCCCGAGGGATCAACATTAAAAATAGTGATTGCCAATGCGAGGGTCTATATGACTGGGTGGTTTGAGTCCCTCTTATAAGTATCACACGATTGGGAGGTTTGAGTCCCCCACATTATAATACATGATTTGGCACTTGTGTCACCTTGATATGCCGGGAGGTTCGAGTCCCCCATAGTTCA
tRNA secondary structure
>>>>>>>...>>>..........<<<.>>>>>............................................................................................................................................<<<<<........>>>.>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AGTGTAGTTGGTATAACGATACCAACAATGCATACCTTAATGTGTAATGTGATTCAATGAATAGGAATGTGTGATACTAGTTTCAATTAGGATTTAATGA
Downstream sequence (upto 100nt)
TATGTATACCCTCTGGTTCCTGCGGCCACACGTACTGGGGCCCTACCATCTGGGGGAGAGCTGGGACCATATAGCCTATGGATGTCTTCTTATGTTAAGA
Mature tRNA
GGGUUAUGUAGCUGAGUCGUAAAAGUGGAGGUCCCGAGCACCUUGAUAUGCCGGGAGGUUCGAGUCCCCCAUAGUUCA
Intron Sequence
GGATCAACATTAAAAATAGTGATTGCCAATGCGAGGGTCTATATGACTGGGTGGTTTGAGTCCCTCTTATAAGTATCACACGATTGGGAGGTTTGAGTCCCCCACATTATAATACATGATTTGGCACTTGTGT
Intron Position39-171
Infernal Score21.5
HMM Score11.30
Secondary structure Score10.20